event-driven-acquisition
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Event-driven acquisitions loops
Usage
Examples
Custom Neural Networks
Custom Loop Compilation
Creating Custom components
API
event-driven-acquisition
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Index
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__init__() (eda_plugin.actuators.micro_manager.DirectMMAcquisition method)
(eda_plugin.actuators.micro_manager.MMAcquisition method)
(eda_plugin.actuators.micro_manager.MMActuator method)
(eda_plugin.actuators.micro_manager.MMActuatorGUI method)
(eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
(eda_plugin.actuators.pycro.PycroAcquisition method)
(eda_plugin.analysers.image.ImageAnalyser method)
(eda_plugin.analysers.image.ImageAnalyserWorker method)
(eda_plugin.analysers.image.PycroImageAnalyser method)
(eda_plugin.analysers.keras.KerasAnalyser method)
(eda_plugin.analysers.keras.KerasSettingsGUI method)
(eda_plugin.analysers.keras.KerasWorker method)
(eda_plugin.examples.analysers.FtsWWorker method)
(eda_plugin.examples.analysers.Keras1CWorker method)
(eda_plugin.examples.analysers.KerasRescaleWorker method)
(eda_plugin.examples.analysers.KerasTester method)
(eda_plugin.examples.analysers.KerasTilingWorker method)
(eda_plugin.examples.interpreters.FrameRateInterpreter method)
(eda_plugin.interpreters.frame_rate.BinaryFrameRateInterpreter method)
(eda_plugin.interpreters.frame_rate.BinaryFrameRateParameterForm method)
(eda_plugin.interpreters.presets.ParameterForm method)
(eda_plugin.interpreters.presets.PresetsInterpreter method)
(eda_plugin.utility.data_structures.EDAEvent method)
(eda_plugin.utility.data_structures.MMChannel method)
(eda_plugin.utility.data_structures.ParameterSet method)
(eda_plugin.utility.data_structures.PyImage method)
(eda_plugin.utility.eda_gui.EDAMainGUI method)
(eda_plugin.utility.eda_gui.EDAPlot method)
(eda_plugin.utility.eda_gui.NapariImageViewer method)
(eda_plugin.utility.eda_gui.NetworkImageViewer method)
(eda_plugin.utility.event_bus.EventBus method)
(eda_plugin.utility.ome_metadata.OME method)
(eda_plugin.utility.qt_classes.QMainWindowRestore method)
(eda_plugin.utility.qt_classes.QWidgetRestore method)
(eda_plugin.utility.writers.NumpyEncoder method)
(eda_plugin.utility.writers.Writer method)
(eda_plugin.utility.writers.WriterGUI method)
A
acquire() (eda_plugin.actuators.micro_manager.DirectMMAcquisition method)
(eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
acquisition_ended_event (eda_plugin.utility.event_bus.EventBus attribute)
acquisition_started_event (eda_plugin.actuators.pycro.PycroAcquisition attribute)
(eda_plugin.utility.event_bus.EventBus attribute)
add_datapoint() (eda_plugin.utility.eda_gui.EDAPlot method)
add_image() (eda_plugin.utility.eda_gui.NetworkImageViewer method)
add_network_image() (eda_plugin.utility.eda_gui.NapariImageViewer method)
(eda_plugin.utility.eda_gui.NetworkImageViewer method)
add_plane_from_image() (eda_plugin.utility.ome_metadata.OME method)
B
basic() (in module eda_plugin.examples.main)
BinaryFrameRateInterpreter (class in eda_plugin.interpreters.frame_rate)
BinaryFrameRateParameterForm (class in eda_plugin.interpreters.frame_rate)
C
calculate_interpretation() (eda_plugin.examples.interpreters.FrameRateInterpreter method)
(eda_plugin.interpreters.frame_rate.BinaryFrameRateInterpreter method)
(eda_plugin.interpreters.presets.PresetsInterpreter method)
calculatePixel() (in module eda_plugin.utility.image_processing)
calibrate() (eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
call_action() (eda_plugin.actuators.micro_manager.MMActuator method)
change_interval() (eda_plugin.actuators.micro_manager.DirectMMAcquisition method)
(eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
(eda_plugin.actuators.pycro.PycroAcquisition method)
channels_from_settings() (eda_plugin.utility.ome_metadata.OME method)
check_missing_channels() (eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
closeEvent() (eda_plugin.actuators.micro_manager.MMActuatorGUI method)
(eda_plugin.analysers.keras.KerasSettingsGUI method)
(eda_plugin.interpreters.frame_rate.BinaryFrameRateParameterForm method)
(eda_plugin.interpreters.presets.ParameterForm method)
(eda_plugin.utility.eda_gui.EDAMainGUI method)
(eda_plugin.utility.qt_classes.QMainWindowRestore method)
(eda_plugin.utility.qt_classes.QWidgetRestore method)
(eda_plugin.utility.writers.WriterGUI method)
configuration_settings_event (eda_plugin.utility.event_bus.EventBus attribute)
connect_incoming_events() (eda_plugin.analysers.image.ImageAnalyser method)
(eda_plugin.analysers.image.PycroImageAnalyser method)
(eda_plugin.analysers.keras.KerasAnalyser method)
connect_worker_signals() (eda_plugin.analysers.image.ImageAnalyser method)
(eda_plugin.analysers.image.PycroImageAnalyser method)
(eda_plugin.analysers.keras.KerasAnalyser method)
D
default() (eda_plugin.utility.writers.NumpyEncoder method)
detector_from_settings() (eda_plugin.utility.ome_metadata.OME method)
DirectMMAcquisition (class in eda_plugin.actuators.micro_manager)
download_data() (in module eda_plugin.utility.download_data)
E
eda_plugin.actuators
module
eda_plugin.actuators.micro_manager
module
eda_plugin.actuators.pycro
module
eda_plugin.analysers
module
eda_plugin.analysers.image
module
eda_plugin.analysers.keras
module
eda_plugin.examples
module
eda_plugin.examples.analysers
module
eda_plugin.examples.data
module
eda_plugin.examples.interpreters
module
eda_plugin.examples.main
module
eda_plugin.interpreters
module
eda_plugin.interpreters.frame_rate
module
eda_plugin.interpreters.presets
module
eda_plugin.utility
module
eda_plugin.utility.data_structures
module
eda_plugin.utility.download_data
module
eda_plugin.utility.eda_gui
module
eda_plugin.utility.event_bus
module
eda_plugin.utility.image_processing
module
eda_plugin.utility.ome_metadata
module
eda_plugin.utility.qt_classes
module
eda_plugin.utility.settings
module
eda_plugin.utility.writers
module
EDAEvent (class in eda_plugin.utility.data_structures)
EDAMainGUI (class in eda_plugin.utility.eda_gui)
EDAPlot (class in eda_plugin.utility.eda_gui)
encode() (eda_plugin.utility.writers.NumpyEncoder method)
EventBus (class in eda_plugin.utility.event_bus)
exposure_changed_event (eda_plugin.utility.event_bus.EventBus attribute)
extract_decision_parameter() (eda_plugin.analysers.image.ImageAnalyserWorker method)
(eda_plugin.analysers.keras.KerasWorker method)
(eda_plugin.examples.analysers.FtsWWorker method)
(eda_plugin.examples.analysers.Keras1CWorker method)
(eda_plugin.examples.analysers.KerasRescaleWorker method)
(eda_plugin.examples.analysers.KerasTester method)
(eda_plugin.examples.analysers.KerasTilingWorker method)
F
finalize_metadata() (eda_plugin.utility.ome_metadata.OME method)
flavour() (in module eda_plugin.examples.main)
FrameRateInterpreter (class in eda_plugin.examples.interpreters)
FtsWWorker (class in eda_plugin.examples.analysers)
G
gather_images() (eda_plugin.analysers.image.ImageAnalyser method)
(eda_plugin.analysers.image.PycroImageAnalyser method)
(eda_plugin.analysers.keras.KerasAnalyser method)
get_channel_information() (eda_plugin.actuators.micro_manager.DirectMMAcquisition method)
(eda_plugin.actuators.micro_manager.MMAcquisition method)
(eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
(eda_plugin.actuators.pycro.PycroAcquisition method)
get_settings() (in module eda_plugin.utility.settings)
getTilePositionsV2() (in module eda_plugin.utility.image_processing)
I
ImageAnalyser (class in eda_plugin.analysers.image)
ImageAnalyserWorker (class in eda_plugin.analysers.image)
init_from_settings() (eda_plugin.utility.ome_metadata.OME method)
install_mm_plugins() (in module eda_plugin.utility.settings)
instrument_from_settings() (eda_plugin.utility.ome_metadata.OME method)
iterencode() (eda_plugin.utility.writers.NumpyEncoder method)
K
keras() (in module eda_plugin.examples.main)
Keras1CWorker (class in eda_plugin.examples.analysers)
KerasAnalyser (class in eda_plugin.analysers.keras)
KerasRescaleWorker (class in eda_plugin.examples.analysers)
KerasSettingsGUI (class in eda_plugin.analysers.keras)
KerasTester (class in eda_plugin.examples.analysers)
KerasTilingWorker (class in eda_plugin.examples.analysers)
KerasWorker (class in eda_plugin.analysers.keras)
M
main() (in module eda_plugin.analysers.keras)
(in module eda_plugin.utility.event_bus)
main_isim() (in module eda_plugin.examples.main)
mda_settings_event (eda_plugin.utility.event_bus.EventBus attribute)
microscope_from_settings() (eda_plugin.utility.ome_metadata.OME method)
MMAcquisition (class in eda_plugin.actuators.micro_manager)
MMActuator (class in eda_plugin.actuators.micro_manager)
MMActuatorGUI (class in eda_plugin.actuators.micro_manager)
MMChannel (class in eda_plugin.utility.data_structures)
module
eda_plugin.actuators
eda_plugin.actuators.micro_manager
eda_plugin.actuators.pycro
eda_plugin.analysers
eda_plugin.analysers.image
eda_plugin.analysers.keras
eda_plugin.examples
eda_plugin.examples.analysers
eda_plugin.examples.data
eda_plugin.examples.interpreters
eda_plugin.examples.main
eda_plugin.interpreters
eda_plugin.interpreters.frame_rate
eda_plugin.interpreters.presets
eda_plugin.utility
eda_plugin.utility.data_structures
eda_plugin.utility.download_data
eda_plugin.utility.eda_gui
eda_plugin.utility.event_bus
eda_plugin.utility.image_processing
eda_plugin.utility.ome_metadata
eda_plugin.utility.qt_classes
eda_plugin.utility.settings
eda_plugin.utility.writers
N
NapariImageViewer (class in eda_plugin.utility.eda_gui)
NetworkImageViewer (class in eda_plugin.utility.eda_gui)
new_acquisition_started_event (eda_plugin.utility.event_bus.EventBus attribute)
new_decision_parameter (eda_plugin.analysers.image.ImageAnalyser attribute)
(eda_plugin.analysers.image.PycroImageAnalyser attribute)
(eda_plugin.analysers.keras.KerasAnalyser attribute)
(eda_plugin.utility.event_bus.EventBus attribute)
new_image (eda_plugin.actuators.pycro.PycroAcquisition attribute)
new_interpretation (eda_plugin.examples.interpreters.FrameRateInterpreter attribute)
(eda_plugin.interpreters.frame_rate.BinaryFrameRateInterpreter attribute)
(eda_plugin.interpreters.presets.PresetsInterpreter attribute)
(eda_plugin.utility.event_bus.EventBus attribute)
new_interval (eda_plugin.actuators.micro_manager.MMActuator attribute)
new_magellan_settings (eda_plugin.utility.event_bus.EventBus attribute)
new_mda_settings() (eda_plugin.analysers.keras.KerasAnalyser method)
new_output_shape (eda_plugin.analysers.keras.KerasAnalyser attribute)
(eda_plugin.utility.event_bus.EventBus attribute)
new_parameters (eda_plugin.interpreters.frame_rate.BinaryFrameRateParameterForm attribute)
(eda_plugin.interpreters.presets.ParameterForm attribute)
(eda_plugin.interpreters.presets.PresetsInterpreter attribute)
new_save_location() (eda_plugin.utility.writers.Writer method)
new_settings (eda_plugin.analysers.keras.KerasSettingsGUI attribute)
new_settings() (eda_plugin.analysers.keras.KerasAnalyser method)
NumpyEncoder (class in eda_plugin.utility.writers)
O
OME (class in eda_plugin.utility.ome_metadata)
P
ParameterForm (class in eda_plugin.interpreters.presets)
ParameterSet (class in eda_plugin.utility.data_structures)
pixels_after_acqusition() (eda_plugin.utility.ome_metadata.OME method)
post_hardware() (eda_plugin.actuators.pycro.PycroAcquisition method)
post_process_output() (eda_plugin.analysers.keras.KerasWorker method)
(eda_plugin.examples.analysers.FtsWWorker method)
(eda_plugin.examples.analysers.Keras1CWorker method)
(eda_plugin.examples.analysers.KerasRescaleWorker method)
(eda_plugin.examples.analysers.KerasTester method)
(eda_plugin.examples.analysers.KerasTilingWorker method)
prepare_1c() (in module eda_plugin.utility.image_processing)
prepare_ftsw() (in module eda_plugin.utility.image_processing)
prepare_images() (eda_plugin.analysers.keras.KerasWorker method)
(eda_plugin.examples.analysers.FtsWWorker method)
(eda_plugin.examples.analysers.Keras1CWorker method)
(eda_plugin.examples.analysers.KerasRescaleWorker method)
(eda_plugin.examples.analysers.KerasTester method)
(eda_plugin.examples.analysers.KerasTilingWorker method)
prepare_nn_image() (eda_plugin.utility.writers.Writer method)
prepare_wo_tiling() (in module eda_plugin.utility.image_processing)
prepareNNImages() (in module eda_plugin.utility.image_processing)
presets() (in module eda_plugin.examples.main)
PresetsInterpreter (class in eda_plugin.interpreters.presets)
PycroAcquisition (class in eda_plugin.actuators.pycro)
PycroImageAnalyser (class in eda_plugin.analysers.image)
PyImage (class in eda_plugin.utility.data_structures)
pyro() (in module eda_plugin.examples.main)
pyro_keras() (in module eda_plugin.examples.main)
Q
QMainWindowRestore (class in eda_plugin.utility.qt_classes)
QWidgetRestore (class in eda_plugin.utility.qt_classes)
R
receive_image() (eda_plugin.actuators.pycro.PycroAcquisition method)
reset_thread() (eda_plugin.actuators.micro_manager.MMActuator method)
run() (eda_plugin.analysers.image.ImageAnalyserWorker method)
(eda_plugin.analysers.keras.KerasWorker method)
(eda_plugin.examples.analysers.FtsWWorker method)
(eda_plugin.examples.analysers.Keras1CWorker method)
(eda_plugin.examples.analysers.KerasRescaleWorker method)
(eda_plugin.examples.analysers.KerasTester method)
(eda_plugin.examples.analysers.KerasTilingWorker method)
S
save_decision_parameter() (eda_plugin.utility.writers.Writer method)
save_image() (eda_plugin.utility.writers.Writer method)
save_imagej_metadata() (eda_plugin.utility.writers.Writer method)
save_metadata() (eda_plugin.utility.writers.Writer method)
save_mmacq_settings() (eda_plugin.utility.writers.Writer method)
save_mmdev_settings() (eda_plugin.utility.writers.Writer method)
save_network_image() (eda_plugin.utility.writers.Writer method)
save_ome_metadata() (eda_plugin.utility.writers.Writer method)
save_thresholds() (eda_plugin.utility.writers.Writer method)
screen_images() (eda_plugin.utility.eda_gui.NetworkImageViewer method)
set_settings() (in module eda_plugin.utility.settings)
setup_logging() (in module eda_plugin.utility.settings)
start() (eda_plugin.actuators.micro_manager.DirectMMAcquisition method)
(eda_plugin.actuators.micro_manager.MMAcquisition method)
(eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
(eda_plugin.actuators.pycro.PycroAcquisition method)
start_acq() (eda_plugin.actuators.micro_manager.DirectMMAcquisition method)
(eda_plugin.actuators.micro_manager.MMAcquisition method)
(eda_plugin.actuators.micro_manager.MMActuator method)
(eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
(eda_plugin.actuators.pycro.PycroAcquisition method)
start_acq_signal (eda_plugin.actuators.micro_manager.MMActuator attribute)
start_analysis() (eda_plugin.analysers.image.ImageAnalyser method)
(eda_plugin.analysers.image.PycroImageAnalyser method)
(eda_plugin.analysers.keras.KerasAnalyser method)
stitchImage() (in module eda_plugin.utility.image_processing)
stop_acq() (eda_plugin.actuators.micro_manager.TimerMMAcquisition method)
(eda_plugin.actuators.pycro.PycroAcquisition method)
T
TimerMMAcquisition (class in eda_plugin.actuators.micro_manager)
U
update_parameters() (eda_plugin.examples.interpreters.FrameRateInterpreter method)
(eda_plugin.interpreters.frame_rate.BinaryFrameRateInterpreter method)
(eda_plugin.interpreters.presets.PresetsInterpreter method)
(eda_plugin.utility.writers.Writer method)
W
Writer (class in eda_plugin.utility.writers)
writer() (in module eda_plugin.examples.main)
WriterGUI (class in eda_plugin.utility.writers)